GrippeCanadaV3, Main, Exploration, bibRecord, 000075

The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States.

Identifieur interne : 000075 ( Main/Exploration ); précédent : 000074; suivant : 000076

The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States.

Auteurs : Martha I. Nelson [États-Unis] ; Marie R. Culhane [États-Unis] ; Nídia S. Trovão [États-Unis] ; Devi P. Patnayak [États-Unis] ; Rebecca A. Halpin [États-Unis] ; Xudong Lin [États-Unis] ; Meghan H. Shilts [États-Unis] ; Suman R. Das [États-Unis] ; Susan E. Detmer [Canada]

Source :

The Journal of general virology [ 1465-2099 ] ; 2017.

RBID : pubmed:29058649

Descripteurs français

KwdFr :
- Animaux, Canada (épidémiologie), Infections à Orthomyxoviridae (médecine vétérinaire), Infections à Orthomyxoviridae (virologie), Infections à Orthomyxoviridae (épidémiologie), Maladies des porcs (virologie), Maladies des porcs (épidémiologie), Suidae, Virus de la grippe A (), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Épidémiologie moléculaire, États-Unis d'Amérique (épidémiologie), Évolution moléculaire.
MESH :
- génétique : Virus de la grippe A.
- isolement et purification : Virus de la grippe A.
- médecine vétérinaire : Infections à Orthomyxoviridae.
- virologie : Infections à Orthomyxoviridae, Maladies des porcs.
- épidémiologie : Canada, Infections à Orthomyxoviridae, Maladies des porcs, États-Unis d'Amérique.
- Animaux, Suidae, Virus de la grippe A, Épidémiologie moléculaire, Évolution moléculaire.

English descriptors

KwdEn :
- Animals, Canada (epidemiology), Evolution, Molecular, Influenza A virus (classification), Influenza A virus (genetics), Influenza A virus (isolation & purification), Molecular Epidemiology, Orthomyxoviridae Infections (epidemiology), Orthomyxoviridae Infections (veterinary), Orthomyxoviridae Infections (virology), Swine, Swine Diseases (epidemiology), Swine Diseases (virology), United States (epidemiology).
MESH :
- classification : Influenza A virus.
- epidemiology : Canada, Orthomyxoviridae Infections, Swine Diseases, United States.
- genetics : Influenza A virus.
- isolation & purification : Influenza A virus.
- veterinary : Orthomyxoviridae Infections.
- virology : Orthomyxoviridae Infections, Swine Diseases.
- Animals, Evolution, Molecular, Molecular Epidemiology, Swine.

Abstract

Swine are a key reservoir host for influenza A viruses (IAVs), with the potential to cause global pandemics in humans. Gaps in surveillance in many of the world's largest swine populations impede our understanding of how novel viruses emerge and expand their spatial range in pigs. Although US swine are intensively sampled, little is known about IAV diversity in Canada's population of ~12 million pigs. By sequencing 168 viruses from multiple regions of Canada, our study reveals that IAV diversity has been underestimated in Canadian pigs for many years. Critically, a new H1 clade has emerged in Canada (H1α-3), with a two-amino acid deletion at H1 positions 146-147, that experienced rapid growth in Manitoba's swine herds during 2014-2015. H1α-3 viruses also exhibit a higher capacity to invade US swine herds, resulting in multiple recent introductions of the virus into the US Heartland following large-scale movements of pigs in this direction. From the Heartland, H1α-3 viruses have disseminated onward to both the east and west coasts of the United States, and may become established in Appalachia. These findings demonstrate how long-distance trading of live pigs facilitates the spread of IAVs, increasing viral genetic diversity and complicating pathogen control. The proliferation of novel H1α-3 viruses also highlights the need for expanded surveillance in a Canadian swine population that has long been overlooked, and may have implications for vaccine design.

DOI: 10.1099/jgv.0.000924
PubMed: 29058649

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<front><div type="abstract" xml:lang="en">Swine are a key reservoir host for influenza A viruses (IAVs), with the potential to cause global pandemics in humans. Gaps in surveillance in many of the world's largest swine populations impede our understanding of how novel viruses emerge and expand their spatial range in pigs. Although US swine are intensively sampled, little is known about IAV diversity in Canada's population of ~12 million pigs. By sequencing 168 viruses from multiple regions of Canada, our study reveals that IAV diversity has been underestimated in Canadian pigs for many years. Critically, a new H1 clade has emerged in Canada (H1α-3), with a two-amino acid deletion at H1 positions 146-147, that experienced rapid growth in Manitoba's swine herds during 2014-2015. H1α-3 viruses also exhibit a higher capacity to invade US swine herds, resulting in multiple recent introductions of the virus into the US Heartland following large-scale movements of pigs in this direction. From the Heartland, H1α-3 viruses have disseminated onward to both the east and west coasts of the United States, and may become established in Appalachia. These findings demonstrate how long-distance trading of live pigs facilitates the spread of IAVs, increasing viral genetic diversity and complicating pathogen control. The proliferation of novel H1α-3 viruses also highlights the need for expanded surveillance in a Canadian swine population that has long been overlooked, and may have implications for vaccine design.</div>
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<Title>The Journal of general virology</Title>
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<Abstract><AbstractText>Swine are a key reservoir host for influenza A viruses (IAVs), with the potential to cause global pandemics in humans. Gaps in surveillance in many of the world's largest swine populations impede our understanding of how novel viruses emerge and expand their spatial range in pigs. Although US swine are intensively sampled, little is known about IAV diversity in Canada's population of ~12 million pigs. By sequencing 168 viruses from multiple regions of Canada, our study reveals that IAV diversity has been underestimated in Canadian pigs for many years. Critically, a new H1 clade has emerged in Canada (H1α-3), with a two-amino acid deletion at H1 positions 146-147, that experienced rapid growth in Manitoba's swine herds during 2014-2015. H1α-3 viruses also exhibit a higher capacity to invade US swine herds, resulting in multiple recent introductions of the virus into the US Heartland following large-scale movements of pigs in this direction. From the Heartland, H1α-3 viruses have disseminated onward to both the east and west coasts of the United States, and may become established in Appalachia. These findings demonstrate how long-distance trading of live pigs facilitates the spread of IAVs, increasing viral genetic diversity and complicating pathogen control. The proliferation of novel H1α-3 viruses also highlights the need for expanded surveillance in a Canadian swine population that has long been overlooked, and may have implications for vaccine design.</AbstractText>
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<Initials>MR</Initials>
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</AffiliationInfo>
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<Initials>NS</Initials>
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</AffiliationInfo>
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</AffiliationInfo>
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</AffiliationInfo>
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</AffiliationInfo>
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<Initials>X</Initials>
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</AffiliationInfo>
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<ArticleIdList><ArticleId IdType="pubmed">29058649</ArticleId>
<ArticleId IdType="doi">10.1099/jgv.0.000924</ArticleId>
<ArticleId IdType="pmc">PMC5718255</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Bioinformatics. 2006 Nov 1;22(21):2688-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16928733</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2008 Jan;82(2):596-601</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17942553</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2015 Sep;89(17):8871-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26085170</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2011 May 26;473(7348):519-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21614079</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Influenza Other Respir Viruses. 2016 Jan;10(1):47-56</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26011186</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell. 1982 Dec;31(2 Pt 1):417-27</Citation>
<ArticleIdList><ArticleId IdType="pubmed">6186384</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Can J Vet Res. 2013 Jan;77(1):24-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23814353</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Virus Res. 2015 Apr 2;201:24-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25701742</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Commun. 2015 Mar 27;6:6696</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25813399</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2012 Dec 15;28(24):3248-56</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23064000</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2010 Apr 16;328(5976):357-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20339031</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 1999 Oct;73(10):8851-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10482643</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Math Biol. 2008 Mar;56(3):391-412</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17874105</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Vet Microbiol. 2014 Jan 10;168(1):197-201</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24321146</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2016 Nov 14;90(23 ):10963-10971</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27681134</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2014 Sep 1;88(17):10110-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24965467</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2016 Aug;33(8):2167-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27189542</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Pathog. 2011 Jun;7(6):e1002077</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21695237</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2009 Jun 1;25(11):1370-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19369496</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2006 Mar;44(3):1123-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16517910</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2000 Jun;38(6):2453-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10835031</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2015 Aug;21(8):1339-47</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26196759</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2011 Jan;85(2):865-72</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21068239</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2015 Oct;89(19):9920-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26202246</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Gen Virol. 2013 Jun;94(Pt 6):1236-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23695819</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>mSphere. 2016 Dec 14;1(6):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27981236</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2012 Aug;29(8):1969-73</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22367748</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2004 Mar 19;32(5):1792-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15034147</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2015 Jun;89(12):6218-26</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25833052</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Can Vet J. 2009 Nov;50(11):1153-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20119537</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Jpn Acad Ser B Phys Biol Sci. 2012;88(6):226-49</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22728439</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Elife. 2016 Apr 15;5:e12217</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27113719</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2004 Sep;42(9):4349-54</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15365042</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2016 Jul;33(7):1870-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27004904</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Pathog. 2014 Feb 20;10(2):e1003932</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24586153</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Gen Virol. 2011 Dec;92(Pt 12):2871-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21849519</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2000 Oct;74(19):9322-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10982381</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Virus Res. 2002 May 10;85(2):199-210</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12034486</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Influenza Other Respir Viruses. 2017 Mar;11(2):182-192</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27860313</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2011 Sep;17(9):1624-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21892996</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2009 Oct;83(19):10309-13</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19605485</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2015 Nov;89(22):11213-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26311895</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Gen Virol. 2016 Jul;97(7):1489-99</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27031847</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2010 Apr;16(4):706-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20350394</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Influenza Other Respir Viruses. 2013 Dec;7 Suppl 4:42-51</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24224819</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2017 Jan 31;91(4):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27928015</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2013 Jun;19(6):954-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23735740</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2015 Jun 01;10(6):e0127840</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26030614</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Influenza Other Respir Viruses. 2012 May;6(3):e42-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22336333</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2013 Jun 18;14:197</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23777206</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2006 Jul;12(7):1132-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16836834</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2012 Jul;40(Web Server issue):W186-92</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22669909</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States.

The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States.

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